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--- en:prace [2020/06/11 15:20] – Vojtěch Zeisek
+++ en:prace [2023/06/27 09:54] (current) – Vojtěch Zeisek
@@ Line 5: / Line 5: @@
 {{ :konsole.png?200|}}
-> :!: **Basic information about work in MetaCentrum are on [[https://wiki.metacentrum.cz/wiki/Categorized_list_of_topics|its wiki]].** Prior you start work on MetaCentrum, reads its documentation and learn how to work in Linux command line. :!:
+> :!: **Basic information about work in MetaCentrum are in [[https://docs.metacentrum.cz/|its documentation]].** Prior you start work on MetaCentrum, reads its documentation and learn how to work in Linux command line. :!:
-MetaCentrum, and therefore the Průhonice cluster, run in a [[https://wiki.metacentrum.cz/wiki/Categorized_list_of_topics|Linux environment]] (use logs in via **SSH**), which implies that users must [[https://wiki.metacentrum.cz/wiki/Beginners_guide|master the basic UNIX commands]] in order to interact with the operating system. The user must prepare in advance a script containing all commands and operations that will be performed during the analysis. The job is executed by submitting the script with the ''qsub'' command. To submit a job to a queue on our cluster the user must add to the ''qsub'' command the ''-q ibot'' parameter. The node on which the computations will be carried out can be specified such as ''-l cluster=carex'', ''-l cluster=draba'' or ''-l cluster=vinca''. Other parameters are available and can be obtained from the [[https://metavo.metacentrum.cz/pbsmon2/qsub_pbspro|qsub assembler tool]]. E.g.:
+MetaCentrum, and therefore the Průhonice cluster, run in a [[https://docs.metacentrum.cz/basics/concepts/|Linux environment]] (users [[https://docs.metacentrum.cz/access/log-in|log in]] via **SSH**), which implies that users must master the [[en:zaklady-prikazove-radky|basic UNIX commands]] in order to interact with the operating system. The user must prepare in advance a script containing all commands and operations that will be performed during the analysis. The job is executed by submitting the script with the ''qsub'' command.
+To submit a job to a queue on our cluster the user must add to the ''qsub'' command the ''-q ibot'' parameter. The node on which the computations will be carried out can be specified such as ''-l cluster=carex'', ''-l cluster=draba'' or ''-l cluster=vinca''. Other parameters are available and can be obtained from the [[https://metavo.metacentrum.cz/pbsmon2/qsub_pbspro|qsub assembler tool]]. E.g.:
 <code bash submitting_tasks.sh>
@@ Line 15: / Line 17: @@
 # ...and run it:
 qsub ... -q ibot ...
-qsub ... -q ibot -l cluster=carex ...
+qsub ... -l select=...:cluster=carex -l -q ibot ...
-qsub ... -q ibot -l cluster=draba ...
+qsub ... -l select=...:cluster=draba -l -q ibot ...
-qsub ... -q ibot -l cluster=vinca ...
+qsub ... -l select=...:cluster=vinca -l -q ibot ...
 qsub -l walltime=1:0:0 -q ibot -l select=1:ncpus=4:mem=4gb:scratch_local=1gb -m abe script.sh
 </code>

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