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--- en:prace [2020/08/14 13:22] – [Work on the cluster] Vojtěch Zeisek
+++ en:prace [2023/06/27 09:52] – Vojtěch Zeisek
@@ Line 5: / Line 5: @@
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-> :!: **Basic information about work in MetaCentrum are on [[https://wiki.metacentrum.cz/wiki/Categorized_list_of_topics|its wiki]].** Prior you start work on MetaCentrum, reads its documentation and learn how to work in Linux command line. :!:
+> :!: **Basic information about work in MetaCentrum are in [[https://docs.metacentrum.cz/|its documentation]].** Prior you start work on MetaCentrum, reads its documentation and learn how to work in Linux command line. :!:
-MetaCentrum, and therefore the Průhonice cluster, run in a [[https://wiki.metacentrum.cz/wiki/Categorized_list_of_topics|Linux environment]] (use logs in via **SSH**), which implies that users must [[https://wiki.metacentrum.cz/wiki/Beginners_guide|master the basic UNIX commands]] in order to interact with the operating system. The user must prepare in advance a script containing all commands and operations that will be performed during the analysis. The job is executed by submitting the script with the ''qsub'' command.
+MetaCentrum, and therefore the Průhonice cluster, run in a [[https://docs.metacentrum.cz/basics/concepts/|Linux environment]] (users [[https://docs.metacentrum.cz/access/log-in/|log in]] via **SSH**), which implies that users must master the [[en:zaklady-prikazove-radky|basic UNIX commands]] in order to interact with the operating system. The user must prepare in advance a script containing all commands and operations that will be performed during the analysis. The job is executed by submitting the script with the ''qsub'' command.
 To submit a job to a queue on our cluster the user must add to the ''qsub'' command the ''-q ibot'' parameter. The node on which the computations will be carried out can be specified such as ''-l cluster=carex'', ''-l cluster=draba'' or ''-l cluster=vinca''. Other parameters are available and can be obtained from the [[https://metavo.metacentrum.cz/pbsmon2/qsub_pbspro|qsub assembler tool]]. E.g.:

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