Výpočetní cluster a úložiště Botanického ústavu & MetaCentra

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en:pristup [2020/06/11 15:17] – [Access to the computing cluster of IBOT for employees and collaborators] Vojtěch Zeiseken:pristup [2023/06/27 09:40] (current) – [Access to the computing cluster of IBOT for employees and collaborators] Vojtěch Zeisek
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   - Complete [[https://metavo.metacentrum.cz/en/application/|the application for the MetaCentrum]] (you can register under any organization, not solely IBOT).   - Complete [[https://metavo.metacentrum.cz/en/application/|the application for the MetaCentrum]] (you can register under any organization, not solely IBOT).
   - Join the **ibot** group by contacting the [[en:spravci-podpora|cluster’s administrator]]. Membership of this group is not mandatory for using the computing resources, but grants a higher priority.   - Join the **ibot** group by contacting the [[en:spravci-podpora|cluster’s administrator]]. Membership of this group is not mandatory for using the computing resources, but grants a higher priority.
-  - It is recommended that computational tasks are prepared on the [[https://wiki.metacentrum.cz/wiki/Frontend|frontend]] node ''tilia.ibot.cas.cz'' (alias ''tilia.metacentrum.cz''), although this is not a requirement.+  - It is recommended that computational tasks are prepared on the [[https://docs.metacentrum.cz/basics/concepts/#frontends-storages-homes|frontend]] node ''tilia.ibot.cas.cz'' (alias ''tilia.metacentrum.cz''), although this is not a requirement.
   - Data can be stored on the [[en:datove-uloziste|Průhonice data storage]] (again not a requirement) at ''/storage/pruhonice1-ibot/''.   - Data can be stored on the [[en:datove-uloziste|Průhonice data storage]] (again not a requirement) at ''/storage/pruhonice1-ibot/''.
   - At submission to the computing queue, by adding to the ''qsub'' command the ''-q ibot'' parameter, the analysis will be carried on our cluster, e.g. ''qsub -l walltime=1:0:0 -q ibot -l select=1:ncpus=1:mem=1gb:scratch_local=1gb -m abe script.sh''.   - At submission to the computing queue, by adding to the ''qsub'' command the ''-q ibot'' parameter, the analysis will be carried on our cluster, e.g. ''qsub -l walltime=1:0:0 -q ibot -l select=1:ncpus=1:mem=1gb:scratch_local=1gb -m abe script.sh''.
  
-Employees and students from other organizations can submit tasks and run [[https://wiki.metacentrum.cz/wiki/Kategorie:Applications|any applications]] on the Průhonice cluster using the same [[https://wiki.metacentrum.cz/wiki/Categorized_list_of_topics|requesting commands]] and following the same [[https://wiki.metacentrum.cz/wiki/Usage_rules|rules]] as for any other node in the MetaCentrum.+Employees and students from other organizations can submit tasks and run [[https://docs.metacentrum.cz/software/modules/|any applications]] on the Průhonice cluster using the same [[https://docs.metacentrum.cz/basics/concepts/|requesting commands]] and following the same [[https://docs.metacentrum.cz/access/terms/#usage-rules|rules]] as for any other node in the MetaCentrum.
  
 ===== Login into MetaCentrum infrastructure ===== ===== Login into MetaCentrum infrastructure =====
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 {{ :eduid.png?600 |EduID}} {{ :eduid.png?600 |EduID}}
  
-After finding and selecting Institute of Botany, the user is redirect to page requesting loging with institutional credentials. User name and password for VERSO are used (no domain):+After finding and selecting Institute of Botany, the user is redirect to page requesting loging with institutional credentials. Domain user name and password (Active Directory) are used as ''name.surname'' (**without** ''@ibot.cas.cz''):
  
-{{ :login.png?600 |Přihlášení}}+{{ :login.png?600 |Login}}
  
-If the user from the Institute of Botany does not have VERSO user name and password, it is necessary to visit https://praha.verso.eis.cas.cz/ and request sending of forgotten password (figure below; using institutional e-mail or personal number)After obtaining user name and password it is possible to use the above login screen. +In case of problems with login contact [[helpdesk@ibot.cas.cz|IT helpdesk]].
- +
-{{ :verso.png?600 |VERSO}}+
  
en/pristup.1591888650.txt.gz · Last modified: 2020/06/11 15:17 by Vojtěch Zeisek